BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB009B12SP1|AL425994
(801 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1619 1374 0.0
>3x_Contig1619
Length = 7770
Score = 1374 bits (677), Expect = 0.0
Identities = 754/800 (94%), Gaps = 2/800 (0%)
Strand = Plus / Plus
Query: 4 tgcgagnagaaatattattatactataaatttattatcaagaattactcttccctgcaaa 63
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1655 tgcgagtagatatattattatactataaatttattatcaagaattactcttccctgcaaa 1714
Query: 64 tgtgacatcacccaaccctagggttgggtgatgtagcgcaggattataatataaacaaac 123
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1715 tgtgacatcacccaaccctagggttgggtgatgtcgcgcaggattataatataaacaaac 1774
Query: 124 cccgcggctacctccagtattgaaagtagccgcggggaatattattaatatataaatkat 183
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 1775 cccgcggctacctccagtattgaaagtagccgcggngaatattattaatatataaattat 1834
Query: 184 ctactagtgattctacaatttctaaaaawattaaatwagaattatgtaataaattaaatg 243
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct: 1835 ctactagtgattctacaatttctaaaaatattaaattagaattatgtaataaattaaatg 1894
Query: 244 aagaattaaatactaattcttcaaaccatactcccccccgcnssgcatcgccctaccgta 303
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1895 aagaattaaatactaattcttcaaaccatactcccccccgcgcggcatcgccctaccgta 1954
Query: 304 gg-tagggcgagccgcgcggg-aawawgangaaattatttctaaaatwaatannnaatat 361
|| |||||||||||||||||| || | || || |||||||||||||| |||| |||||
Sbjct: 1955 gggtagggcgagccgcgcggggaatatgatgatattatttctaaaattaatattgaatat 2014
Query: 362 attgtaggatttatcgaagctgaaggtcatttagctatttctaaaaawataaacaataac 421
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 2015 attgtaggatttatcgaagctgaaggtcatttagctatttctaaaaatataaacaataac 2074
Query: 422 tataaaadaagtttagaagtatctcaacatataaatbcacccgcsgctcctcccttcggg 481
||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 2075 tataaaataagtttagaagtatctcaacatataaattcacccgcggctcctcccttcggg 2134
Query: 482 gggagaccgcggggaagannnaatgaaggcnantcaaganactattttaaattgaactcc 541
|||||||||||||||||| ||||||||| | |||||| ||||||||||||||||||||
Sbjct: 2135 gggagaccgcggggaagatttaatgaaggctattcaagatactattttaaattgaactcc 2194
Query: 542 tgataatagtttattatatgatttacctaaatctactaawaaaahtbataaaccccgcgg 601
||||||||||||||||||||||||||||||||||||||| |||| | |||||||||||||
Sbjct: 2195 tgataatagtttattatatgatttacctaaatctactaataaaatttataaaccccgcgg 2254
Query: 602 ctcctcccctggtaatccctttaaaggggaggagtccgcggggaagatagtaatawatwt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 2255 ctcctcccctggtaatccctttaaaggggaggagtccgcggggaagatagtaataaatat 2314
Query: 662 wkwttttaavkbkcyagtactgatagattatattatcmagtatttccaactatgttaaat 721
|||||| | |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2315 agattttaaatttctagtactgatagattatattatcaagtatttccaactatgttaaat 2374
Query: 722 agtggattatataytagaaaatatattgattttgtaatgtgattttctagtattatcatt 781
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2375 agtggattatatactagaaaatatattgattttgtaatgtgattttctagtattatcatt 2434
Query: 782 atawaacatggtttacataa 801
||| ||||||||||||||||
Sbjct: 2435 ataaaacatggtttacataa 2454
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.41 0.715 1.33
Gapped
Lambda K H
1.41 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4803
Number of Sequences: 1807
Number of extensions: 4803
Number of successful extensions: 170
Number of sequences better than 1.0e-20: 1
length of query: 801
length of database: 10,358,551
effective HSP length: 16
effective length of query: 785
effective length of database: 10,329,639
effective search space: 8108766615
effective search space used: 8108766615
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.4 bits)
S1: 12 (24.8 bits)
S2: 49 (99.9 bits)